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fMRI Tools Documentation Wiki |
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Core tools These functions are used in multiple toolboxes, and should be on your Matlab path (with subfolders) if you are using any of the other toolboxes. This version is SPM2/5 and 8 (???) compatible, and compatible with 3-D or 4-D analyze files (.img). They should also read Nifti (.nii) files as well. Not all combinations of platforms/SPM versions have been tested, so please report bugs or other problems. Last updated 3.26.2010 |
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Mediation Toolbox: Single- and Multi-level Mediation Search Mediation toolbox |
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Inverse Logit Hemodynamic Response Estimation Toolbox - version 1.0
This toolbox will estimate parameters for a flexible hemodynamic response function (HRF) using three superimposed inverse logit functions. |
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Genetic Algorithm - version 1.1.2 Optimize experimental design for fMRI. SPM99, SPM2, SPM5, SPM8 |
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Robust Toolbox - version 1.2 Robust second-level analysis of brain imaging data - includes visualization tools, but requires SPM2/5 Last updated 2007.8.10 |
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Visualization: CANlab 3dHeadUtility 3-D volume visualization and movie tools (used with robust toolbox and mediation toolbox) Last updated 2010.7.12 |
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Meta-analysis (Multilevel Kernel Density Analysis) - version 1.0 |
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Hewma
version 1.0 beta |
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Diagnostic tools See in particular: scn_session_spike_id.m, scnlab_pca_denoise_session.m, scnlab_norm_check3.m, effect_size_map.m Last updated 2010.9.10 |
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©2003-2010 Tor Wager | Software • Meta-analysis • Lab • Papers • Art |